If your bike is wired like that schematic I posted, No. The reg wont impact the ignition circuits at all. The way the bike above is wired, it should run without a battery or the reg even installed if you bumped or kick started it.
Yes, that schematic is fairly close to what I have. Just some minor differences but I have the correct one for my bike. I've had a pretty much dead battery and been able to kick start it just fine.
Checking voltage from the pulse gen while cranking I get basically nothing. The resistance reading is correct but it's not making much if any electricity. The generator seems to be making power.
Gotta pull the damn flywheel to get to the wire for the pulse gen. to get it out because it runs behind it.